SMTL ID : 5x2c.2 (1 other biounit)

Crystal structure of EGFR 696-1022 T790M/V948R in complex with SKLB(5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: Y.110, I.118, Y.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.117 Water bridges: A:G.119 EDO.2: 3 residues within 4Å: Chain A: R.141, L.142, V.143 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.143 Water bridges: A:V.143 EDO.3: 6 residues within 4Å: Chain A: T.218, S.221, P.243, Q.244, P.245, P.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.221, A:S.221, A:Q.244 EDO.4: 4 residues within 4Å: Chain A: R.241, R.257, W.260, M.261 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.241, A:R.257 EDO.5: 6 residues within 4Å: Chain A: K.258, D.265, S.266, R.267, P.268, E.272 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.272 EDO.6: 3 residues within 4Å: Chain A: G.292, E.294, R.295 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.292, A:E.294, A:R.295 Water bridges: A:E.294 EDO.7: 4 residues within 4Å: Chain A: P.81, D.315, M.316, D.317 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.317 Water bridges: A:N.80

1 x 7XR: 9-cyclopentyl-N2-[4-(4-methylpiperazin-1-yl)phenyl]-N8-phenyl-purine-2,8-diamine(Non-covalent)

7XR.8: 14 residues within 4Å: Chain A: L.27, G.28, V.35, A.52, K.54, M.99, Q.100, L.101, M.102, P.103, G.105, L.153, T.163, D.164 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.27, A:L.27, A:V.35, A:K.54, A:K.54, A:L.153 Hydrogen bonds: A:M.102, A:M.102, A:G.105 Water bridges: A:D.164

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 1 residues within 4Å: Chain A: R.198 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, S.J. et al., Structural insights into drug development strategy targeting EGFR T790M/C797S. Oncotarget (2018)

Release Date

2018-02-21

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Epidermal growth factor receptor

Related Entries With Identical Sequence