- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.60 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 144 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 3 x ZN: ZINC ION(Non-covalent)
ZN.144: 4 residues within 4Å:- Chain E: C.105
- Chain O: C.66, C.69, C.101
4 PLIP interactions:1 interactions with chain E, 3 interactions with chain O- Metal complexes: E:C.105, O:C.66, O:C.69, O:C.101
ZN.145: 4 residues within 4Å:- Chain M: C.26
- Chain W: C.139, C.141, C.149
4 PLIP interactions:3 interactions with chain W, 1 interactions with chain M- Metal complexes: W:C.139, W:C.141, W:C.149, M:C.26
ZN.148: 4 residues within 4Å:- Chain 8: C.94, C.105, C.108, C.143
4 PLIP interactions:4 interactions with chain 8- Metal complexes: 8:C.94, 8:C.105, 8:C.108, 8:C.143
- 1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.146: 17 residues within 4Å:- Chain 0: R.85, F.86, M.99, R.101, E.128, K.129, G.130, T.131, G.132, K.133, T.134, L.135, Q.311, Y.347, P.387, G.388
- Ligands: MG.147
13 PLIP interactions:13 interactions with chain 0- Hydrogen bonds: 0:M.99, 0:G.130, 0:T.131, 0:G.132, 0:K.133, 0:T.134, 0:T.134, 0:L.135, 0:Q.311, 0:Y.347
- Water bridges: 0:T.134, 0:T.134
- Salt bridges: 0:K.133
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Greber, B.J. et al., Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome. Science (2015)
- Release Date
- 2015-04-22
- Peptides
- MITORIBOSOMAL PROTEIN US2M, MRPS2: B
MITORIBOSOMAL PROTEIN US3M, MRPS24: C
MITORIBOSOMAL PROTEIN US5M, MRPS5: D
MITORIBOSOMAL PROTEIN BS6M, MRPS6: E
MITORIBOSOMAL PROTEIN US7M, MRPS7: F
MITORIBOSOMAL PROTEIN US9M, MRPS9: G
MITORIBOSOMAL PROTEIN US10M, MRPS10: H
MITORIBOSOMAL PROTEIN US11M, MRPS11: I
MITORIBOSOMAL PROTEIN US12M, MRPS12: J
MITORIBOSOMAL PROTEIN US14M, MRPS14: K
MITORIBOSOMAL PROTEIN US15M, MRPS15: L
MITORIBOSOMAL PROTEIN BS16M, MRPS16: M
MITORIBOSOMAL PROTEIN US17M, MRPS17: N
MITORIBOSOMAL PROTEIN BS18M, MRPS18C: O
MITORIBOSOMAL PROTEIN BL19M, MRPL19: P
MITORIBOSOMAL PROTEIN BS21M, MRPS21: Q
MITORIBOSOMAL PROTEIN MS22, MRPS22: U
MITORIBOSOMAL PROTEIN MS23, MRPS23: V
MITORIBOSOMAL PROTEIN MS25, MRPS25: W
MITORIBOSOMAL PROTEIN MS26, MRPS26: X
MITORIBOSOMAL PROTEIN MS27, MRPS27: Y
MITORIBOSOMAL PROTEIN MS28, MRPS28: Z
MITORIBOSOMAL PROTEIN MS29, MRPS29: 0
MITORIBOSOMAL PROTEIN MS31, MRPS31: 1
MITORIBOSOMAL PROTEIN MS33, MRPS33: 2
MITORIBOSOMAL PROTEIN MS34, MRPS34: 3
MITORIBOSOMAL PROTEIN MS35, MRPS35: 4
MITORIBOSOMAL PROTEIN MS37, MRPS37: 5
MITORIBOSOMAL PROTEIN MS38, MRPS38: 6
MITORIBOSOMAL PROTEIN MS39, MRPS39: 7
MITORIBOSOMAL PROTEIN MS40, MRPS18B: 8
UNASSIGNED HELICES: 9
UNASSIGNED HELICES: a - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
BC
CD
EE
FF
GG
IH
JI
KJ
LK
NL
OM
PN
QO
RP
TQ
UU
aV
bW
cX
dY
eZ
f0
g1
h2
i3
j4
k5
m6
n7
o8
p9
sa
z
SMTL ID : 5aj3.1
Structure of the small subunit of the mammalian mitoribosome
MITORIBOSOMAL PROTEIN US2M, MRPS2
MITORIBOSOMAL PROTEIN US3M, MRPS24
MITORIBOSOMAL PROTEIN US5M, MRPS5
MITORIBOSOMAL PROTEIN BS6M, MRPS6
MITORIBOSOMAL PROTEIN US7M, MRPS7
MITORIBOSOMAL PROTEIN US9M, MRPS9
MITORIBOSOMAL PROTEIN US10M, MRPS10
MITORIBOSOMAL PROTEIN US11M, MRPS11
MITORIBOSOMAL PROTEIN US12M, MRPS12
MITORIBOSOMAL PROTEIN US14M, MRPS14
MITORIBOSOMAL PROTEIN US15M, MRPS15
MITORIBOSOMAL PROTEIN BS16M, MRPS16
MITORIBOSOMAL PROTEIN US17M, MRPS17
MITORIBOSOMAL PROTEIN BS18M, MRPS18C
MITORIBOSOMAL PROTEIN BL19M, MRPL19
MITORIBOSOMAL PROTEIN BS21M, MRPS21
MITORIBOSOMAL PROTEIN MS22, MRPS22
MITORIBOSOMAL PROTEIN MS23, MRPS23
MITORIBOSOMAL PROTEIN MS25, MRPS25
MITORIBOSOMAL PROTEIN MS26, MRPS26
MITORIBOSOMAL PROTEIN MS27, MRPS27
MITORIBOSOMAL PROTEIN MS28, MRPS28
MITORIBOSOMAL PROTEIN MS29, MRPS29
MITORIBOSOMAL PROTEIN MS31, MRPS31
MITORIBOSOMAL PROTEIN MS33, MRPS33
MITORIBOSOMAL PROTEIN MS34, MRPS34
MITORIBOSOMAL PROTEIN MS35, MRPS35
MITORIBOSOMAL PROTEIN MS37, MRPS37
MITORIBOSOMAL PROTEIN MS38, MRPS38
MITORIBOSOMAL PROTEIN MS39, MRPS39
MITORIBOSOMAL PROTEIN MS40, MRPS18B
UNASSIGNED HELICES
UNASSIGNED HELICES
Related Entries With Identical Sequence
1ati.1 | 1r42.1 | 1r4l.1 | 3jd5.1 | 4wz7.1 | 5aj4.4 | 5aj4.7 | 5aj4.10 | 5aj4.11 | 5aj4.17 | 5aj4.20 | 5aj4.21 | 5aj4.22 | 5aj4.25 | 5c3l.1 | 5fl7.1 | 5kmx.1 | 5lqx.1 | 5lqy.1 | 5lqz.1 | 5me3.1 | 5nbm.1 | 5nbm.2 | 5nui.1 | 5tw1.1 | 6b3r.1 | 6bk8.1 | 6ccv.1 | 6gaw.60 | 6gaw.62 more...less...6gaw.63 | 6gaw.64 | 6gaw.66 | 6gaw.67 | 6gaw.68 | 6gaw.69 | 6gaw.70 | 6gaw.71 | 6gaw.72 | 6gaw.73 | 6gaw.74 | 6gaw.76 | 6gaw.77 | 6gaw.78 | 6gaw.80 | 6gaw.83 | 6gaw.85 | 6gaw.86 | 6gaw.89 | 6gaz.1 | 6gmh.1 | 6jq0.1 | 6mpv.1 | 6msm.1 | 6o1v.1 | 6o2p.1 | 6o81.1 | 6o85.1 | 6pxk.1 | 6sg9.1 | 6sri.1 | 6srs.1 | 6v8o.1 | 6v92.1 | 6vvs.1 | 6vzv.1 | 6ww7.1 | 6ydp.30 | 6ydp.32 | 6ydp.34 | 6ydp.37 | 6ydp.38 | 6ydp.39 | 6ydp.40 | 6ydp.41 | 6ydp.42 | 6ydp.43 | 6ydp.44 | 6ydp.46 | 6ydp.47 | 6ydp.48 | 6ydp.50 | 6ydp.54 | 6ydp.56 | 6ydp.57 | 6ydp.60 | 6ydw.31 | 6ydw.33 | 6ydw.35 | 6ydw.37 | 6ydw.38 | 6ydw.39 | 6ydw.40 | 6ydw.41 | 6ydw.42 | 6ydw.43 | 6ydw.44 | 6ydw.46 | 6ydw.47 | 6ydw.48 | 6ydw.51 | 6ydw.54 | 6ydw.56 | 6ydw.57 | 6ydw.60 | 7ado.1 | 7f66.1 | 7f67.1 | 7ins.1 | 7ins.4 | 7ins.5 | 7ins.6 | 7ins.8 | 7ins.10 | 7nqh.56 | 7nqh.58 | 7nqh.63 | 7nqh.64 | 7nqh.65 | 7nqh.66 | 7nqh.67 | 7nqh.68 | 7nqh.69 | 7nqh.70 | 7nqh.72 | 7nqh.73 | 7nqh.74 | 7nqh.77 | 7nqh.80 | 7nqh.82 | 7nqh.83 | 7nqh.86 | 7nql.48 | 7nql.50 | 7nql.52 | 7nql.55 | 7nql.56 | 7nql.57 | 7nql.58 | 7nql.59 | 7nql.60 | 7nql.62 | 7nql.63 | 7nql.65 | 7nql.66 | 7nql.67 | 7nql.69 | 7nql.72 | 7nql.74 | 7nql.75 | 7nql.78 | 7nsi.52 | 7nsi.54 | 7nsi.56 | 7nsi.59 | 7nsi.60 | 7nsi.61 | 7nsi.62 | 7nsi.63 | 7nsi.64 | 7nsi.65 | 7nsi.66 | 7nsi.68 | 7nsi.69 | 7nsi.70 | 7nsi.72 | 7nsi.75 | 7nsi.77 | 7nsi.78 | 7nsi.81 | 7nsj.51 | 7nsj.53 | 7nsj.55 | 7nsj.58 | 7nsj.59 | 7nsj.60 | 7nsj.61 | 7nsj.62 | 7nsj.63 | 7nsj.64 | 7nsj.65 | 7nsj.67 | 7nsj.68 | 7nsj.69 | 7nsj.71 | 7nsj.74 | 7nsj.76 | 7nsj.77 | 7nsj.80 | 7nvr.1 | 7nvv.1 | 7nvx.1 | 7nw0.1 | 7qok.1 | 7qol.1 | 7s78.1 | 7s78.2 | 7sv7.1 | 7svd.1 | 7us2.1 | 7vdv.1 | 7xbk.1 | 7ycx.1 | 7z30.1 | 8agw.1 | 8ddq.1 | 8ddr.1 | 8dds.1 | 8ddt.1 | 8ddu.1 | 8ddv.1 | 8ddw.1 | 8ddx.1 | 8ed7.1 | 8ed8.1 | 8ed9.1 | 8eio.1 | 8eiq.1 | 8oin.61 | 8oin.62 | 8oin.64 | 8oin.65 | 8oin.67 | 8oin.68 | 8oin.69 | 8oin.70 | 8oin.71 | 8oin.73 | 8oin.74 | 8oin.75 | 8oin.77 | 8oin.82 | 8oin.83 | 8oin.84 | 8oip.1