SMTL ID : 5ngr.1 (1 other biounit)

Crystal structure of human MTH1 in complex with fragment inhibitor 8-(methylsulfanyl)-7H-purin-6-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 8WT: 8-methylsulfanyl-7~{H}-purin-6-amine(Non-covalent)

8WT.1: 11 residues within 4Å: Chain A: L.12, F.30, N.36, G.37, F.75, M.84, W.120, D.122, D.123, W.126 Ligands: SO4.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.37, A:G.37 Water bridges: A:W.120 pi-Stacking: A:W.120

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: H.137, R.154 4 PLIP interactions: 4 interactions with chain A Water bridges: A:G.138, A:T.152 Salt bridges: A:H.137, A:R.154 SO4.3: 4 residues within 4Å: Chain A: R.154, V.156, D.157, T.158 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.157, A:T.158 Salt bridges: A:R.154 SO4.4: 5 residues within 4Å: Chain A: A.66, H.68, T.91, D.92, S.93 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.91, A:D.92, A:S.93, A:S.93, A:S.93 Salt bridges: A:H.68 SO4.5: 8 residues within 4Å: Chain A: K.26, N.36, G.37, F.38, G.39, E.59, M.104 Ligands: 8WT.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.36, A:G.37, A:G.39, A:G.39 Salt bridges: A:K.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudling, A. et al., Fragment-Based Discovery and Optimization of Enzyme Inhibitors by Docking of Commercial Chemical Space. J. Med. Chem. (2017)

Release Date

2017-10-04

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7,8-dihydro-8-oxoguanine triphosphatase

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