SMTL ID : 8a0t.2 (1 other biounit)

MTH1 in complex with TH012532

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x KLO: 5-(phenylmethyl)pyrimidine-2,4-diol(Non-covalent)

KLO.1: 12 residues within 4Å: Chain A: Y.10, L.12, F.30, N.36, F.75, M.84, V.86, W.120, D.122, D.123, W.126 Ligands: ACT.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.30, A:M.84, A:V.86, A:W.120 Hydrogen bonds: A:N.36, A:N.36, A:N.36 Water bridges: A:G.37 pi-Stacking: A:Y.10, A:F.75, A:W.120

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: Y.10, T.11, L.12, G.39, G.40 Ligands: KLO.1 No protein-ligand interaction detected (PLIP)

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: H.137, R.154 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.137, A:R.154 SO4.4: 4 residues within 4Å: Chain A: R.154, V.156, D.157, T.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.157, A:T.158, A:T.158 Salt bridges: A:R.154 SO4.5: 3 residues within 4Å: Chain A: T.47, I.48, E.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.48, A:E.49 SO4.6: 3 residues within 4Å: Chain A: L.67, H.68, K.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.67, A:K.69 Salt bridges: A:H.68 SO4.7: 4 residues within 4Å: Chain A: H.68, T.91, D.92, S.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.92, A:S.93 Salt bridges: A:H.68 SO4.8: 4 residues within 4Å: Chain A: R.20, T.97, P.98, W.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.97, A:W.108 Salt bridges: A:R.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaletti, E. et al., MTH1 in complex with TH012532. To Be Published

Release Date

2023-09-13

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

7,8-dihydro-8-oxoguanine triphosphatase

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