SMTL ID : 6f22.2 (1 other biounit)

Complex between MTH1 and compound 29 (a 4-amino-2,7-diazaindole derivative)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x C9B: (3~{S})-3-phenyl-4-(2~{H}-pyrazolo[3,4-b]pyridin-4-yl)morpholine(Non-covalent)

C9B.1: 13 residues within 4Å: Chain A: Y.10, T.11, L.12, K.26, F.30, N.36, G.39, G.40, F.75, M.84, W.120, D.122, D.123 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.10, A:L.12, A:F.75, A:W.120 Hydrogen bonds: A:D.123 Water bridges: A:W.120 pi-Stacking: A:W.120

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.154, V.156, D.157, T.158 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.157, A:T.158 Water bridges: A:E.155, A:D.157, A:T.158, A:T.158, A:T.158 Salt bridges: A:R.154 SO4.3: 5 residues within 4Å: Chain A: A.66, H.68, T.91, D.92, S.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.92, A:S.93 Salt bridges: A:H.68 SO4.4: 2 residues within 4Å: Chain A: Y.125, Y.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.125, A:Y.151 SO4.5: 2 residues within 4Å: Chain A: H.137, R.154 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.152, A:R.154 Salt bridges: A:H.137, A:R.154 SO4.6: 3 residues within 4Å: Chain A: T.47, I.48, E.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.48, A:E.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rahm, F. et al., Creation of a Novel Class of Potent and Selective MutT Homologue 1 (MTH1) Inhibitors Using Fragment-Based Screening and Structure-Based Drug Design. J. Med. Chem. (2018)

Release Date

2018-03-07

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

7,8-dihydro-8-oxoguanine triphosphatase

Related Entries With Identical Sequence