SMTL ID : 6f23.1 (1 other biounit)

Complex between MTH1 and compound 16 (a 4-amino-7-azaindole derivative)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x C8Z: 4-[(2~{R})-2-phenylpyrrolidin-1-yl]-1~{H}-pyrrolo[2,3-b]pyridine(Non-covalent)

C8Z.1: 11 residues within 4Å: Chain A: T.11, L.12, F.30, N.36, G.40, F.75, F.77, M.84, W.120, D.122, D.123 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.12, A:F.30, A:F.77 Hydrogen bonds: A:D.122 pi-Stacking: A:W.120, A:W.120, A:W.120

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.154, V.156, D.157, T.158 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.157, A:T.158, A:T.158 Water bridges: A:T.158 Salt bridges: A:R.154 SO4.3: 3 residues within 4Å: Chain A: G.1, H.137, R.154 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.137, A:R.154 SO4.4: 5 residues within 4Å: Chain A: A.66, H.68, T.91, D.92, S.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.92, A:D.92 Salt bridges: A:H.68 SO4.5: 2 residues within 4Å: Chain A: H.68, K.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.69 Water bridges: A:L.67 Salt bridges: A:H.68, A:K.69 SO4.6: 4 residues within 4Å: Chain A: R.20, T.97, P.98, W.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.97, A:W.108 Salt bridges: A:R.20

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: T.47, I.48, E.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.48, A:E.49 GOL.8: 2 residues within 4Å: Chain A: K.141, D.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.141, A:D.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rahm, F. et al., Creation of a Novel Class of Potent and Selective MutT Homologue 1 (MTH1) Inhibitors Using Fragment-Based Screening and Structure-Based Drug Design. J. Med. Chem. (2018)

Release Date

2018-03-07

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7,8-dihydro-8-oxoguanine triphosphatase

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