SMTL ID : 5nhy.1 (1 other biounit)

BAY-707 in complex with MTH1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x 8XT: ~{N}-ethyl-4-[(3~{S})-3-methylmorpholin-4-yl]-1~{H}-pyrrolo[2,3-b]pyridine-2-carboxamide(Non-covalent)

8XT.1: 12 residues within 4Å: Chain A: L.12, F.30, N.36, G.37, F.75, M.84, M.119, W.120, D.122, D.123, W.126, F.127 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.75, A:W.120, A:W.126, A:F.127 Hydrogen bonds: A:G.37, A:D.123, A:D.123 Water bridges: A:W.120 pi-Stacking: A:W.120

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: L.67, H.68, K.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.67, A:K.69 Salt bridges: A:H.68, A:K.69 SO4.3: 2 residues within 4Å: Chain A: H.137, R.154 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.154 Salt bridges: A:H.137, A:R.154 SO4.4: 3 residues within 4Å: Chain A: R.20, W.108 Ligands: SO4.7 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.20 SO4.5: 5 residues within 4Å: Chain A: A.66, H.68, T.91, D.92, S.93 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.91, A:D.92, A:S.93, A:S.93 Salt bridges: A:H.68 SO4.6: 4 residues within 4Å: Chain A: K.27, E.100, S.101, D.102 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.101 Water bridges: A:D.102 Salt bridges: A:K.27 SO4.7: 5 residues within 4Å: Chain A: P.98, P.106, C.107, W.108 Ligands: SO4.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.108

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: R.154, V.156, D.157, T.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.157, A:D.157, A:T.158 Water bridges: A:T.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ellermann, M. et al., Novel Class of Potent and Cellularly Active Inhibitors Devalidates MTH1 as Broad-Spectrum Cancer Target. ACS Chem. Biol. (2017)

Release Date

2017-07-19

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7,8-dihydro-8-oxoguanine triphosphatase

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