SMTL ID : 6f20.1 (1 other biounit)

Complex between MTH1 and compound 1 (a 7-azaindole-4-ester derivative)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x C9E: Ethyl 1H-pyrrolo[2,3-b]pyridine-4-carboxylate(Non-covalent)

C9E.1: 9 residues within 4Å: Chain A: Y.10, T.11, L.12, N.36, F.75, M.84, W.120, D.122, D.123 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.12 Hydrogen bonds: A:D.123 pi-Stacking: A:F.75, A:W.120, A:W.120, A:W.120

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.20, T.97, P.98, W.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.97, A:W.108 Salt bridges: A:R.20 SO4.3: 2 residues within 4Å: Chain A: H.68, K.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.69 Salt bridges: A:H.68, A:K.69, A:K.135 SO4.4: 2 residues within 4Å: Chain A: H.137, R.154 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.137, A:R.154 SO4.5: 5 residues within 4Å: Chain A: A.66, H.68, T.91, D.92, S.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.92, A:D.92 Salt bridges: A:H.68 SO4.6: 4 residues within 4Å: Chain A: R.154, V.156, D.157, T.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.157, A:T.158, A:T.158 Salt bridges: A:R.154

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 2 residues within 4Å: Chain A: V.78, G.79 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.78 ACT.8: 4 residues within 4Å: Chain A: K.27, E.100, S.101, D.102 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rahm, F. et al., Creation of a Novel Class of Potent and Selective MutT Homologue 1 (MTH1) Inhibitors Using Fragment-Based Screening and Structure-Based Drug Design. J. Med. Chem. (2018)

Release Date

2018-03-07

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7,8-dihydro-8-oxoguanine triphosphatase

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