SMTL ID : 5ngs.2 (1 other biounit)

Crystal structure of human MTH1 in complex with inhibitor 6-[(2-phenylethyl)sulfanyl]-7H-purin-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 8WW: 6-(2-phenylethylsulfanyl)-7~{H}-purin-2-amine(Non-covalent)

8WW.1: 13 residues within 4Å: Chain A: Y.10, T.11, L.12, F.30, N.36, G.39, G.40, F.75, M.84, W.120, D.122, D.123, W.126 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.10, A:F.30 Hydrogen bonds: A:N.36, A:N.36 Salt bridges: A:D.122, A:D.123 pi-Stacking: A:F.75, A:W.120, A:W.120, A:W.120

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.154, V.156, D.157, T.158 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.157, A:D.157, A:D.157, A:T.158 Water bridges: A:T.158 Salt bridges: A:R.154 SO4.3: 2 residues within 4Å: Chain A: H.137, R.154 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Q.72, A:R.154 Salt bridges: A:H.137, A:R.154 SO4.4: 3 residues within 4Å: Chain A: L.67, H.68, K.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.69 Water bridges: A:K.135 Salt bridges: A:H.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudling, A. et al., Fragment-Based Discovery and Optimization of Enzyme Inhibitors by Docking of Commercial Chemical Space. J. Med. Chem. (2017)

Release Date

2017-10-04

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

7,8-dihydro-8-oxoguanine triphosphatase

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