SMTL ID : 5v3o.1

Cereblon in complex with DDB1 and CC-220

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 8W7: (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione(Non-covalent)

8W7.1: 10 residues within 4Å: Chain B: N.315, P.316, H.317, E.341, H.342, S.343, W.344, W.350, W.364, F.366 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:P.316, B:P.316, B:E.341, B:W.344, B:W.350, B:W.350, B:W.364, B:F.366 Hydrogen bonds: B:N.315, B:H.342, B:W.344

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.287, C.290, C.355, C.358 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.287, B:C.290, B:C.355, B:C.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matyskiela, M.E. et al., A Cereblon Modulator (CC-220) with Improved Degradation of Ikaros and Aiolos. J. Med. Chem. (2018)

Release Date

2017-05-03

Peptides

DNA damage-binding protein 1: A
Protein cereblon: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

DNA damage-binding protein 1

Protein cereblon

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