SMTL ID : 6bfd.1 (1 other biounit)

BACE crystal structure with hydroxy pyrrolidine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x DJS: 2-{[(2S)-butan-2-yl]amino}-N-{(1R,2S)-1-hydroxy-3-phenyl-1-[(2R)-pyrrolidin-2-yl]propan-2-yl}-6-(methylsulfonyl)pyridine-4-carboxamide(Non-covalent)

DJS.1: 22 residues within 4Å: Chain A: S.59, Q.61, G.62, L.79, D.81, G.83, S.84, Y.120, T.121, Q.122, F.157, I.159, W.164, I.167, Y.247, D.277, S.278, G.279, T.280, T.281, N.282, R.284 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.79, A:Y.120, A:Y.120, A:Q.122, A:F.157, A:I.159, A:W.164, A:I.167 Hydrogen bonds: A:D.81, A:T.121, A:T.121, A:Q.122, A:D.277, A:G.279, A:T.280, A:T.281, A:T.281 Water bridges: A:D.277, A:T.281, A:T.281 pi-Stacking: A:Y.120

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: S.107, T.108, Y.109, R.110, R.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.110, A:R.110, A:R.145 GOL.3: 9 residues within 4Å: Chain A: T.68, V.69, G.70, S.71, P.73, L.133, V.134, S.135, T.143 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.68, A:T.68, A:T.68, A:S.135 Water bridges: A:S.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bueno, A.B. et al., Optimization of Hydroxyethylamine Transition State Isosteres as Aspartic Protease Inhibitors by Exploiting Conformational Preferences. J. Med. Chem. (2017)

Release Date

2017-11-15

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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