SMTL ID : 6bfe.2 (1 other biounit)

BACE crystal structure with hydroxy pyrrolidine inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x DJV: N-[(1R,2S)-1-[(2R,4R)-4-(cyclohexylmethoxy)pyrrolidin-2-yl]-3-(3,5-difluorophenyl)-1-hydroxypropan-2-yl]acetamide(Non-covalent)

DJV.1: 23 residues within 4Å: Chain A: L.79, D.81, G.83, S.84, S.85, V.118, P.119, Y.120, T.121, Q.122, G.123, K.156, F.157, I.159, W.164, I.167, I.175, R.177, Y.247, I.275, D.277, G.279, T.280 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.79, A:V.118, A:Y.120, A:Y.120, A:Q.122, A:F.157, A:I.167 Hydrogen bonds: A:D.81, A:T.121, A:Q.122, A:D.277, A:G.279 pi-Stacking: A:Y.120

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: T.68, V.69, G.70, S.71, P.73, L.133, V.134, S.135, T.143 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.68, A:T.68, A:S.135 Water bridges: A:S.71, A:S.71, A:S.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bueno, A.B. et al., Optimization of Hydroxyethylamine Transition State Isosteres as Aspartic Protease Inhibitors by Exploiting Conformational Preferences. J. Med. Chem. (2017)

Release Date

2017-11-15

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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