SMTL ID : 6uwv.1 (1 other biounit)

BACE-1 in complex with compound #34

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x QK7: (4aR,7aR)-7a-[(1R,2R)-2-(2-{[(1R,2R)-2-methylcyclopropyl]methoxy}propan-2-yl)cyclopropyl]-6-(pyrimidin-2-yl)-4,4a,5,6,7,7a-hexahydropyrrolo[3,4-d][1,3]thiazin-2-amine(Non-covalent)

QK7.1: 19 residues within 4Å: Chain A: S.59, G.60, Q.61, G.62, L.79, D.81, G.83, S.84, V.118, Y.120, F.157, W.164, I.167, R.177, D.277, S.278, G.279, T.280, T.281 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.79, A:V.118, A:Y.120, A:Y.120, A:W.164, A:I.167 Hydrogen bonds: A:S.84, A:D.277 Water bridges: A:S.85

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: T.131, R.145, N.147, E.183, S.188 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.147, A:S.188 Water bridges: A:R.110, A:T.131, A:E.183, A:Q.192, A:Q.192 GOL.3: 3 residues within 4Å: Chain A: R.99, Y.100, Q.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.100, A:Y.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Winneroski, L.L. et al., Preparation and biological evaluation of BACE1 inhibitors: Leveraging trans-cyclopropyl moieties as ligand efficient conformational constraints. Bioorg.Med.Chem. (2020)

Release Date

2019-12-11

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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