SMTL ID : 6bfw.1 (1 other biounit)

BACE crystal structure with hydroxy morpholine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x DK7: N-[(1S,2S)-1-[(3R,6R)-6-(cyclohexylmethoxy)morpholin-3-yl]-3-(3,5-difluorophenyl)-1-hydroxypropan-2-yl]acetamide(Non-covalent)

DK7.1: 19 residues within 4Å: Chain A: L.79, D.81, G.83, S.84, V.118, Y.120, T.121, G.123, K.156, F.157, I.159, W.164, I.167, I.175, Y.247, I.275, D.277, G.279, T.280 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.79, A:V.118, A:Y.120, A:Y.120, A:I.167 Hydrogen bonds: A:D.81, A:T.121, A:T.121, A:Y.247, A:D.277, A:G.279, A:T.280 Water bridges: A:Q.122, A:T.378 pi-Stacking: A:Y.120

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: F.208, G.322, D.367 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.322 Water bridges: A:G.207, A:D.367 GOL.3: 6 residues within 4Å: Chain A: T.131, R.145, N.147, E.183, S.188, Q.192 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.147, A:S.188, A:Q.192 Water bridges: A:R.110, A:T.131, A:N.147, A:N.147, A:N.147, A:E.183, A:K.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bueno, A.B. et al., Optimization of Hydroxyethylamine Transition State Isosteres as Aspartic Protease Inhibitors by Exploiting Conformational Preferences. J. Med. Chem. (2017)

Release Date

2017-11-15

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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