SMTL ID : 6biv.1

HLA-DRB1 in complex with citrullinated LL37 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.76, N.78 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: N.118, E.166, H.167, W.168 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.166 Hydrogen bonds: A:N.118, A:W.168 Water bridges: A:W.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ting, Y.T. et al., The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in rheumatoid arthritis. J. Biol. Chem. (2018)

Release Date

2018-01-17

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen, DRB1-4 beta chain: B
LL37_Cit91: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

HLA class II histocompatibility antigen, DR alpha chain

HLA class II histocompatibility antigen, DRB1-4 beta chain

LL37_Cit91

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