SMTL ID : 6fo8.1

Vitamin D nuclear receptor complex 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x DZT: (1~{R},3~{S},5~{Z})-4-methylidene-5-[(~{E})-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]non-2-enylidene]cyclohexane-1,3-diol(Non-covalent)

DZT.1: 22 residues within 4Å: Chain A: Y.22, Y.26, M.101, L.105, L.108, V.109, S.112, I.143, I.146, M.147, R.149, S.150, S.153, W.161, C.163, Y.170, V.175, H.180, H.270, Y.274, L.277, F.295 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.105, A:L.108, A:L.108, A:V.109, A:I.143, A:I.146, A:W.161, A:Y.170, A:Y.170, A:Y.170, A:V.175, A:L.277, A:F.295 Hydrogen bonds: A:Y.22, A:Y.22, A:S.112, A:R.149, A:S.153 DZT.2: 22 residues within 4Å: Chain C: Y.22, Y.26, M.101, L.105, L.108, V.109, S.112, I.143, I.146, M.147, R.149, S.150, S.153, W.161, C.163, Y.170, V.175, H.180, H.270, Y.274, L.277, F.295 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:L.105, C:L.108, C:L.108, C:V.109, C:I.143, C:I.146, C:W.161, C:Y.170, C:Y.170, C:Y.170, C:V.175, C:L.277, C:F.295 Hydrogen bonds: C:Y.22, C:S.112, C:R.149, C:S.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gogoi, P. et al., Aromatic-Based Design of Highly Active and Noncalcemic Vitamin D Receptor Agonists. J. Med. Chem. (2018)

Release Date

2018-05-16

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

C
1

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 1

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