SMTL ID : 6fob.1

Vitamin D receptor complex 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-2-2-mer

Ligands

2 x DZW: (1~{R},3~{S},5~{Z})-4-methylidene-5-[(~{E})-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]dec-2-enylidene]cyclohexane-1,3-diol(Non-covalent)

DZW.1: 27 residues within 4Å: Chain A: Y.22, Y.26, M.101, L.105, L.108, V.109, S.112, I.143, I.146, M.147, R.149, S.150, S.153, W.161, C.163, Y.170, D.174, V.175, A.178, H.180, L.188, H.270, Y.274, L.277, L.287, V.291, F.295 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:M.101, A:L.105, A:L.105, A:L.108, A:V.109, A:I.143, A:I.146, A:W.161, A:Y.170, A:Y.170, A:V.175, A:A.178, A:L.188, A:Y.274, A:L.277, A:L.287, A:V.291, A:F.295 Hydrogen bonds: A:Y.22, A:Y.22, A:S.112, A:R.149 DZW.2: 27 residues within 4Å: Chain C: Y.22, Y.26, M.101, L.105, L.108, V.109, S.112, I.143, I.146, M.147, R.149, S.150, S.153, W.161, C.163, Y.170, D.174, V.175, A.178, H.180, L.188, H.270, Y.274, L.277, L.287, V.291, F.295 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:M.101, C:L.105, C:L.105, C:L.108, C:V.109, C:I.143, C:I.146, C:W.161, C:Y.170, C:Y.170, C:V.175, C:A.178, C:L.188, C:Y.274, C:L.277, C:L.287, C:V.291, C:F.295 Hydrogen bonds: C:Y.22, C:S.112, C:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gogoi, P. et al., Aromatic-Based Design of Highly Active and Noncalcemic Vitamin D Receptor Agonists. J. Med. Chem. (2018)

Release Date

2018-05-16

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 1

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