SMTL ID : 6icj.1

Crystal structure of PPARgamma with compound BR102375K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.2: 3 residues within 4Å: Chain A: Y.115, T.242, L.271 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.192 Water bridges: A:Y.115, A:L.271

1 x A0L: 2-butyl-5-[(3-tert-butyl-1,2,4-oxadiazol-5-yl)methyl]-6-methyl-3-{[2'-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)[1,1'-biphenyl]-4-yl]methyl}pyrimidin-4(3H)-one(Non-covalent)

A0L.3: 22 residues within 4Å: Chain A: I.76, F.77, C.80, R.83, S.84, A.87, H.118, I.121, M.124, L.125, L.128, I.136, F.155, F.158, M.159, H.244, L.248, I.251, M.258, L.260, L.264, Y.268 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.76, A:F.77, A:F.77, A:F.77, A:F.77, A:R.83, A:M.124, A:L.125, A:L.128, A:I.136, A:F.155, A:F.158, A:L.248, A:I.251 Hydrogen bonds: A:H.244, A:Y.268 pi-Stacking: A:F.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, E. et al., Crystal structure of PPARgamma with compound BR102375K. To Be Published

Release Date

2019-09-11

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Nuclear receptor coactivator 1

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