SMTL ID : 6kyp.1 (1 other biounit)

X-ray structure of human PPARalpha ligand binding domain-GW9662-clofibric acid co-crystals obtained by delipidation and co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

monomer

Ligands

3 x GW9: 2-chloro-5-nitro-N-phenylbenzamide(Covalent)

GW9.1: 12 residues within 4Å: Chain A: I.46, L.52, A.55, I.77, C.81, T.84, L.126, M.135, L.136, V.137, A.138 Ligands: GW9.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.46, A:L.52, A:T.84, A:V.137, A:V.137, A:V.137 GW9.2: 7 residues within 4Å: Chain A: A.55, E.56, L.59, C.80, A.138, Y.139 Ligands: GW9.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.59, A:A.138, A:Y.139 GW9.3: 12 residues within 4Å: Chain A: L.59, K.62, L.63, N.66, I.68, H.79, C.80, C.83, A.260, L.261, H.262, P.263 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.62 Hydrogen bonds: A:N.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor alpha

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