SMTL ID : 6kyp.2 (1 other biounit)

X-ray structure of human PPARalpha ligand binding domain-GW9662-clofibric acid co-crystals obtained by delipidation and co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

monomer

Ligands

3 x GW9: 2-chloro-5-nitro-N-phenylbenzamide(Covalent)

GW9.1: 13 residues within 4Å: Chain A: I.46, L.52, I.77, C.80, C.81, T.84, L.126, M.135, L.136, V.137, I.144 Ligands: GW9.2, E0O.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.46, A:L.52, A:T.84, A:V.137, A:V.137 GW9.2: 7 residues within 4Å: Chain A: A.55, E.56, L.59, C.80, A.138, Y.139 Ligands: GW9.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.138, A:Y.139, A:Y.139 GW9.3: 12 residues within 4Å: Chain A: L.59, K.62, L.63, N.66, I.68, H.79, Q.82, C.83, A.260, L.261, H.262, P.263 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.62 Hydrogen bonds: A:N.66, A:C.83

1 x E0O: 2-(4-chloranylphenoxy)-2-methyl-propanoic acid(Non-covalent)

E0O.4: 16 residues within 4Å: Chain A: F.78, C.81, Q.82, S.85, Y.119, I.122, F.123, L.126, I.159, M.160, H.245, V.249, L.261, L.265, Y.269 Ligands: GW9.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.78, A:Q.82, A:Y.119, A:F.123 Hydrogen bonds: A:S.85, A:S.85, A:Y.269 Salt bridges: A:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator-activated receptor alpha

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