SMTL ID : 6l37.2 (1 other biounit)

X-ray structure of human PPARalpha ligand binding domain-GW9662-ciprofibrate co-crystals obtained by delipidation and co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

monomer

Ligands

3 x GW9: 2-chloro-5-nitro-N-phenylbenzamide(Covalent)

GW9.1: 11 residues within 4Å: Chain A: I.46, L.52, A.55, C.81, T.84, L.126, L.136, V.137, A.138 Ligands: GW9.2, C5F.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.46, A:L.52, A:T.84, A:V.137, A:V.137 Hydrogen bonds: A:T.84 GW9.2: 7 residues within 4Å: Chain A: A.55, E.56, L.59, C.80, A.138, Y.139 Ligands: GW9.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.59, A:A.138, A:Y.139 GW9.3: 12 residues within 4Å: Chain A: L.59, K.62, L.63, N.66, H.79, C.80, Q.82, C.83, A.260, L.261, H.262, P.263 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.62 Hydrogen bonds: A:K.62, A:H.79

1 x C5F: 2-{4-[(1S)-2,2-dichlorocyclopropyl]phenoxy}-2-methylpropanoic acid(Non-covalent)

C5F.4: 15 residues within 4Å: Chain A: F.78, C.81, Q.82, S.85, Y.119, F.123, I.159, H.245, V.249, I.252, A.259, A.260, L.261, Y.269 Ligands: GW9.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.78, A:F.78, A:Q.82, A:Y.119, A:F.123, A:V.249, A:L.261 Hydrogen bonds: A:C.81, A:S.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator-activated receptor alpha

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