SMTL ID : 6lx5.1 (1 other biounit)

X-ray structure of human PPARalpha ligand binding domain-ciprofibrate co-crystals obtained by delipidation and co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: E.207, V.210, H.211, R.214, F.228 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.207, A:R.214, A:R.214, A:R.214

2 x C5F: 2-{4-[(1S)-2,2-dichlorocyclopropyl]phenoxy}-2-methylpropanoic acid(Non-covalent)

C5F.2: 18 residues within 4Å: Chain A: F.78, C.81, Q.82, S.85, Y.119, F.123, F.156, I.159, M.160, H.245, V.249, I.252, K.253, A.259, A.260, L.261, L.265, Y.269 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.78, A:F.78, A:Q.82, A:I.159, A:I.252, A:A.259, A:L.261 Hydrogen bonds: A:S.85, A:Y.119 Salt bridges: A:H.245 Halogen bonds: A:V.249 C5F.3: 11 residues within 4Å: Chain A: I.46, L.59, K.62, I.77, C.80, T.84, E.87, V.137, A.138, Y.139, I.144 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.59, A:K.62, A:V.137 Hydrogen bonds: A:Y.139 Water bridges: A:K.62, A:T.84, A:E.87, A:Y.139 Salt bridges: A:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor alpha

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