SMTL ID : 6lx4.1 (1 other biounit)

X-ray structure of human PPARalpha ligand binding domain-fenofibric acid co-crystals obtained by delipidation and co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

2 x F5A: 2-[4-(4-chlorobenzene-1-carbonyl)phenoxy]-2-methylpropanoic acid(Non-covalent)

F5A.1: 17 residues within 4Å: Chain A: F.78, C.81, Q.82, S.85, Y.119, F.123, F.156, I.159, H.245, V.249, I.252, K.253, A.259, A.260, L.261, L.265, Y.269 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.78, A:F.78, A:Q.82, A:I.159, A:V.249, A:I.252, A:A.259, A:L.261, A:L.261 Hydrogen bonds: A:Q.82, A:S.85, A:S.85, A:Y.119, A:Y.269 Salt bridges: A:H.245 F5A.2: 11 residues within 4Å: Chain A: I.46, L.52, L.59, K.62, I.77, C.80, C.81, T.84, V.137, A.138, Y.139 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.59, A:V.137, A:V.137, A:Y.139 Hydrogen bonds: A:Y.139 Water bridges: A:A.138 Salt bridges: A:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor alpha

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