SMTL ID : 7bpy.2 (1 other biounit)

X-ray structure of human PPARalpha ligand binding domain-clofibric acid-SRC1 coactivator peptide co-crystals obtained by delipidation and co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

2 x E0O: 2-(4-chloranylphenoxy)-2-methyl-propanoic acid(Non-covalent)

E0O.1: 14 residues within 4Å: Chain A: F.78, C.81, Q.82, S.85, Y.119, F.123, I.159, M.160, H.245, V.249, I.252, L.261, L.265, Y.269 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Q.82, A:I.159, A:V.249, A:L.261 Hydrogen bonds: A:S.85, A:S.85, A:Y.119, A:Y.269 Salt bridges: A:H.245 E0O.2: 8 residues within 4Å: Chain A: L.59, K.62, C.80, C.83, T.84, V.137, A.138, Y.139 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.59, A:V.137 Hydrogen bonds: A:T.84, A:T.84, A:A.138 Salt bridges: A:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A
15-meric peptide from Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Peroxisome proliferator-activated receptor alpha

15-meric peptide from Nuclear receptor coactivator 1

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