SMTL ID : 7e5f.1

HUMAN PPAR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH TIPP703 OBTAINED BY SOAKING

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x S44: (2S)-2-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}benzyl)butanoic acid(Non-covalent)

S44.1: 24 residues within 4Å: Chain A: I.46, L.52, E.56, L.59, V.60, F.78, C.80, C.81, Q.82, T.84, S.85, Y.119, F.123, L.126, M.130, M.135, V.137, A.138, I.159, M.160, F.164, H.245, L.265, Y.269 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.46, A:L.52, A:E.56, A:L.59, A:V.60, A:F.78, A:Q.82, A:T.84, A:F.123, A:L.126, A:V.137, A:V.137, A:V.137, A:I.159, A:M.160, A:F.164 Hydrogen bonds: A:T.84, A:S.85, A:S.85, A:Y.119, A:Y.269 Salt bridges: A:H.245 S44.2: 25 residues within 4Å: Chain A: F.226 Chain B: I.46, L.52, E.56, L.59, V.60, F.78, C.80, C.81, Q.82, T.84, S.85, Y.119, F.123, L.126, M.130, M.135, V.137, A.138, I.159, M.160, F.164, H.245, L.265, Y.269 20 PLIP interactions: 19 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.46, B:L.52, B:E.56, B:L.59, B:V.60, B:F.78, B:Q.82, B:T.84, B:F.123, B:L.126, B:V.137, B:V.137, B:V.137, B:I.159, B:M.160, B:F.164, A:F.226 Hydrogen bonds: B:S.85, B:S.85 Salt bridges: B:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oyama, T. et al., Crystal Structures of the Human Peroxisome Proliferator-Activated Receptor (PPAR) alpha Ligand-Binding Domain in Complexes with a Series of Phenylpropanoic Acid Derivatives Generated by a Ligand-Exchange Soaking Method. Biol.Pharm.Bull. (2021)

Release Date

2021-10-06

Peptides

Peroxisome proliferator-activated receptor alpha: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Peroxisome proliferator-activated receptor alpha

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