SMTL ID : 7e5i.1

HUMAN PPAR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH APHM6 OBTAINED BY SOAKING

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

2 x HW3: (2S)-2-[[3-[[3-fluoranyl-4-(4-fluoranylphenoxy)phenyl]methylcarbamoyl]-4-methoxy-phenyl]methyl]butanoic acid(Non-covalent)

HW3.1: 23 residues within 4Å: Chain A: I.46, L.52, A.55, E.56, V.60, I.77, F.78, C.80, C.81, Q.82, T.84, S.85, Y.119, F.123, L.126, M.130, M.135, V.137, I.159, M.160, H.245, L.265, Y.269 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.46, A:L.52, A:E.56, A:F.78, A:Q.82, A:F.123, A:L.126, A:V.137, A:V.137 Hydrogen bonds: A:S.85, A:S.85, A:Y.119, A:Y.269 Salt bridges: A:H.245 HW3.2: 24 residues within 4Å: Chain A: F.226 Chain B: I.46, L.52, A.55, E.56, V.60, I.77, F.78, C.80, C.81, Q.82, T.84, S.85, Y.119, F.123, L.126, M.130, M.135, V.137, I.159, M.160, H.245, L.265, Y.269 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.46, B:L.52, B:E.56, B:F.78, B:Q.82, B:F.123, B:L.126, B:V.137, B:V.137 Hydrogen bonds: B:S.85, B:S.85 Salt bridges: B:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oyama, T. et al., Crystal Structures of the Human Peroxisome Proliferator-Activated Receptor (PPAR) alpha Ligand-Binding Domain in Complexes with a Series of Phenylpropanoic Acid Derivatives Generated by a Ligand-Exchange Soaking Method. Biol.Pharm.Bull. (2021)

Release Date

2021-10-06

Peptides

Peroxisome proliferator-activated receptor alpha: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Peroxisome proliferator-activated receptor alpha

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