SMTL ID : 6nix.1

Crystal structure of Immune Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.76, N.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.76 NAG.2: 5 residues within 4Å: Chain A: V.116, N.118, E.166, H.167, W.168 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.166 Hydrogen bonds: A:W.168 Water bridges: A:W.168 NAG.4: 2 residues within 4Å: Chain B: N.21, E.24 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.21

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.3: 7 residues within 4Å: Chain B: I.129, E.130, V.131, S.146, G.148, T.159, V.161 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:E.130, B:V.131, B:V.131, B:V.131, B:S.146, B:G.148, B:G.148, B:T.159 Water bridges: B:I.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ting, Y.T. et al., Immune Receptor. To Be Published

Release Date

2020-01-22

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen, DRB1-4 beta chain: B
Type II Collagen: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class II histocompatibility antigen, DR alpha chain

HLA class II histocompatibility antigen, DRB1-4 beta chain

Type II Collagen

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