SMTL ID : 6pdz.1

Crystal structure of PPARgamma ligand binding domain in complex with SMRT peptide and inverse agonist T0070907

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x EEY: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide(Covalent)

EEY.1: 14 residues within 4Å: Chain A: I.79, F.80, C.83, Q.84, H.121, Y.125, F.161, M.162, K.165, H.247, L.250, Y.271, L.274, Y.275 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.79, A:F.80, A:F.80, A:Q.84, A:Y.275 Hydrogen bonds: A:Y.275 Water bridges: A:Y.125, A:K.165 pi-Stacking: A:H.247 EEY.2: 13 residues within 4Å: Chain C: F.80, C.83, Q.84, H.121, Y.125, F.161, M.162, K.165, H.247, L.250, Y.271, L.274, Y.275 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:F.80, C:H.247, C:Y.271, C:Y.275, C:Y.275 Hydrogen bonds: C:H.247, C:Y.275, C:Y.275 pi-Stacking: C:F.80, C:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., A molecular switch regulating transcriptional repression and activation of PPAR gamma. Nat Commun (2020)

Release Date

2020-03-04

Peptides

Peroxisome proliferator-activated receptor gamma: AC
Nuclear receptor corepressor 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

B
C

D
D

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 2

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