SMTL ID : 6pva.1

The structure of NTMT1 in complex with compound 11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x 6D6- GLZ- PRO- LYS- LYS- NH2: AMINO GROUP-()-LYSINE-()-LYSINE-()-PROLINE-()-AMINO-ACETALDEHYDE-()-5'-{[(3S)-3-amino-3-carboxypropyl](3-aminopropyl)amino}-5'-deoxyadenosine(Non-covalent)

6D6-GLZ-PRO-LYS-LYS-NH2.1: 29 residues within 4Å: Chain A: W.38, M.48, L.49, Y.52, I.55, G.87, A.88, G.89, R.92, I.93, D.109, I.110, T.111, F.114, C.135, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, N.186, D.195, D.198, S.200, E.231, I.232, Y.233 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:W.38, A:Y.52, A:I.55, A:W.154, A:E.231, A:I.232, A:Y.233 Hydrogen bonds: A:G.87, A:I.110, A:T.111, A:L.137, A:Q.138, A:N.186, A:D.195, A:S.200, A:E.231, A:Y.233 Water bridges: A:Q.153, A:H.158, A:N.186 Salt bridges: A:R.92 pi-Stacking: A:W.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, D. et al., The structure of NTMT1 in complex with compound 11. To Be published

Release Date

2020-08-19

Peptides

N-terminal Xaa-Pro-Lys N-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

N-terminal Xaa-Pro-Lys N-methyltransferase 1

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