SMTL ID : 6ri7.1

Cryo-EM structure of E. coli RNA polymerase elongation complex bound to GreB transcription factor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain G: C.70, C.72, C.85, C.88 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.70, G:C.72, G:C.85, G:C.88 ZN.2: 6 residues within 4Å: Chain G: C.814, R.883, C.888, D.889, C.895, C.898 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.814, G:C.888, G:C.895, G:C.898

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain G: R.425, D.460, D.462, D.464 Chain I: G.14 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.460, G:D.462, G:D.462, G:D.464, G:D.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abdelkareem, M. et al., Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation. Mol.Cell (2019)

Release Date

2019-07-03

Peptides

Transcription elongation factor GreB: CJ
DNA-directed RNA polymerase subunit alpha: DE
DNA-directed RNA polymerase subunit beta: F
DNA-directed RNA polymerase subunit beta': G
DNA-directed RNA polymerase subunit omega: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
F

J
G

D
A

E
B

F
C

G
D

H
E

Transcription elongation factor GreB

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

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