SMTL ID : 6wj7.1

The structure of NTMT1 in complex with compound C2A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x GLY- PRO- LYS- ARG- ILE- ALA- NH2: GLY-PRO-LYS-ARG-ILE-ALA-NH2(Non-covalent)

GLY-PRO-LYS-ARG-ILE-ALA-NH2.1: 13 residues within 4Å: Chain A: M.48, L.49, Y.52, I.55, W.154, N.186, D.195, D.198, S.200, E.231, I.232, Y.233 Ligands: AN6.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.52, A:I.55, A:I.232, A:Y.233 Hydrogen bonds: A:M.48, A:N.186, A:D.198, A:S.200, A:E.231, A:Y.233, A:Y.233 Water bridges: A:N.186 Salt bridges: A:E.231

1 x AN6: 5'-{[(3S)-3-amino-3-carboxypropyl](ethyl)amino}-5'-deoxyadenosine(Non-covalent)

AN6.2: 20 residues within 4Å: Chain A: W.38, M.48, G.87, G.89, R.92, I.93, D.109, I.110, T.111, F.114, C.135, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159 Ligands: GLY-PRO-LYS-ARG-ILE-ALA-NH2.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.154 Hydrogen bonds: A:G.87, A:I.110, A:T.111, A:L.137, A:Q.138 Water bridges: A:H.158 Salt bridges: A:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, D. et al., Probing the Plasticity in the Active Site of Protein N-terminal Methyltransferase 1 Using Bisubstrate Analogues. J.Med.Chem. (2020)

Release Date

2020-08-19

Peptides

N-terminal Xaa-Pro-Lys N-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

N-terminal Xaa-Pro-Lys N-methyltransferase 1

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