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SMTL ID : 6wwi.1

Apo KIF14[391-755] in complex with a microtubule

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1:

20 residues within 4Å:

Chain A: G.10, Q.11, Q.15, E.71, A.99, N.101, S.140, G.143, G.144, T.145, I.171, T.179, E.183, N.206, Y.224, N.228
Chain B: Q.245, L.246, K.252
Ligands: MG.2

15 PLIP interactions:

13 interactions with chain A, 2 interactions with chain B

Hydrogen bonds: A:Q.11, A:A.99, A:N.101, A:S.140, A:G.143, A:G.144, A:T.145, A:E.183, A:N.206, A:N.228, A:N.228, A:N.228
pi-Stacking: A:Y.224
Salt bridges: B:K.252, B:K.252

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2:

3 residues within 4Å:

Chain A: E.71
Chain B: K.252
Ligands: GTP.1

1 PLIP interactions:

1 interactions with chain A

Metal complexes: A:E.71

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3:

11 residues within 4Å:

Chain B: G.10, Q.11, C.12, N.99, S.138, G.142, T.143, D.177, N.204, Y.222, N.226

12 PLIP interactions:

12 interactions with chain B

Hydrogen bonds: B:Q.11, B:C.12, B:S.138, B:G.142, B:T.143, B:T.143, B:T.143, B:D.177, B:N.204, B:N.226, B:N.226, B:N.226

1 x TA1: TAXOL(Non-covalent)

TA1.4:

18 residues within 4Å:

Chain B: E.22, V.23, D.26, E.27, L.215, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, R.276, P.358, R.359, G.360

13 PLIP interactions:

13 interactions with chain B

Hydrophobic interactions: B:V.23, B:V.23, B:D.26, B:L.215, B:H.227, B:L.228, B:A.231, B:F.270, B:F.270
Hydrogen bonds: B:T.274, B:R.359
Salt bridges: B:H.227, B:R.276

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Benoit, M.P.M.H. et al., Structural basis of mechano-chemical coupling by the mitotic kinesin KIF14. Nat Commun (2021)

Release Date

2021-05-05

Peptides

Tubulin alpha-1B chain: A
Tubulin beta-2B chain: B
Kinesin-like protein KIF14: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
K

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Tubulin alpha-1B chain

Tubulin beta-2B chain

Kinesin-like protein KIF14

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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