- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.1: 18 residues within 4Å:- Chain A: A.85, H.86, K.87, Q.114, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, A.348, E.350, S.377, G.378
- Ligands: TRP.20
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:A.85, A:K.87, A:A.348
- Hydrogen bonds: A:G.232, A:G.233, A:G.234, A:S.235, A:N.236, A:N.236, A:S.377
- Water bridges: A:S.235, A:S.235, A:A.237
- Salt bridges: A:H.86, A:K.87
- pi-Stacking: A:H.86
- 8 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.2: 5 residues within 4Å:- Chain A: K.50, G.54, R.55, P.56
- Ligands: CS.14
No protein-ligand interaction detected (PLIP)DMS.3: 1 residues within 4Å:- Chain A: L.271
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.317
DMS.4: 5 residues within 4Å:- Chain A: Q.42, F.45, A.46, L.49, M.207
No protein-ligand interaction detected (PLIP)DMS.5: 3 residues within 4Å:- Chain A: Q.36, Q.42
- Ligands: CL.17
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.36
DMS.6: 2 residues within 4Å:- Chain A: E.211, A.214
No protein-ligand interaction detected (PLIP)DMS.7: 3 residues within 4Å:- Chain A: Y.8, G.10
- Ligands: PEG.12
1 PLIP interactions:1 interactions with chain A- pi-Cation interactions: A:Y.8
DMS.21: 5 residues within 4Å:- Chain B: N.12, R.15, E.16, G.17, V.224
No protein-ligand interaction detected (PLIP)DMS.22: 5 residues within 4Å:- Chain B: P.78, A.79, F.82, F.114, R.117
1 PLIP interactions:1 interactions with chain B- Water bridges: B:N.109
- 6 x CS: CESIUM ION(Non-covalent)
CS.8: 3 residues within 4Å:- Chain A: T.66, T.69, T.71
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.71
CS.9: 6 residues within 4Å:- Chain A: V.231, G.232, G.268, L.304, F.306, S.308
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:G.232, A:F.306
CS.13: 2 residues within 4Å:- Chain A: S.297, D.305
No protein-ligand interaction detected (PLIP)CS.14: 3 residues within 4Å:- Chain A: G.54, P.56
- Ligands: DMS.2
No protein-ligand interaction detected (PLIP)CS.15: 4 residues within 4Å:- Chain A: K.99
- Chain B: S.221, A.265, R.267
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:K.99
CS.24: 3 residues within 4Å:- Chain B: A.167, G.170, H.204
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:A.167, H2O.24
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 6 residues within 4Å:- Chain A: H.273, G.274, R.275, M.286, M.287, Q.288
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.286, A:Q.288
EDO.11: 2 residues within 4Å:- Chain A: T.2, N.26
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.2
- Water bridges: A:N.26
EDO.23: 3 residues within 4Å:- Chain B: F.107, N.108, G.110
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.110
- Water bridges: B:N.108, B:N.109, B:I.111
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.12: 6 residues within 4Å:- Chain A: N.6, Y.8, F.9, G.10, Y.315
- Ligands: DMS.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.6, A:G.10
- Water bridges: A:Y.315
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.16: 1 residues within 4Å:- Chain A: S.143
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain A: Q.36, K.37
- Ligands: DMS.5
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain A: D.225, S.249, G.251
Ligand excluded by PLIPCL.19: 1 residues within 4Å:- Chain A: D.218
Ligand excluded by PLIPCL.25: 1 residues within 4Å:- Chain B: I.153
Ligand excluded by PLIP- 1 x TRP: TRYPTOPHAN(Non-covalent)
TRP.20: 15 residues within 4Å:- Chain A: K.87, E.109, T.110, G.111, A.112, G.113, Q.114, H.115, L.166, T.190, G.233, A.302, G.303, F.306
- Ligands: PLP.1
13 PLIP interactions:13 interactions with chain A,- Hydrophobic interactions: A:L.166, A:T.190, A:F.306
- Hydrogen bonds: A:E.109, A:T.110, A:G.111, A:A.112, A:G.113, A:Q.114, A:H.115, A:A.302
- Salt bridges: A:K.87
- pi-Stacking: A:F.306
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hilario, E. et al., The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with cesium ion at the metal coordination site and the product L-tryptophan at the enzyme beta-site at 1.60 Angstrom resolution. To be Published
- Release Date
- 2022-03-02
- Peptides
- Tryptophan synthase beta chain: A
Tryptophan synthase alpha chain: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A
SMTL ID : 7lut.1
The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with cesium ion at the metal coordination site and the product L-tryptophan at the enzyme beta-site at 1.60 Angstrom resolution
Tryptophan synthase beta chain
Tryptophan synthase alpha chain
Related Entries With Identical Sequence
1a50.1 | 1a5s.1 | 1bks.1 | 1c29.1 | 1c8v.1 | 1c9d.1 | 1cw2.1 | 1cx9.1 | 1fuy.1 | 1k3u.1 | 1k7e.1 | 1k7f.1 | 1k7x.1 | 1k8x.1 | 1k8y.1 | 1k8z.1 | 1kfc.1 | 1kfj.1 | 1kfk.1 | 1qoq.1 | 1tjp.1 | 1ttp.1 | 1ttq.1 | 1ubs.1 | 2cle.1 | 2clf.1 | 2clh.1 | 2cli.1 | 2cll.1 | 2clm.1 more...less...2clo.1 | 2j9x.1 | 2j9y.1 | 2rh9.1 | 2rhg.1 | 2trs.1 | 2tsy.1 | 2tys.1 | 2wsy.1 | 4hn4.1 | 4hpj.1 | 4hpx.1 | 4hpx.2 | 4ht3.1 | 4kkx.1 | 4wx2.1 | 4xug.1 | 4y6g.1 | 4zqc.1 | 5bw6.1 | 5cgq.1 | 6c73.1 | 6d0v.1 | 6duc.1 | 6dz4.1 | 6dzo.1 | 6o1h.1 | 6oso.1 | 6ouy.1 | 6vfd.1 | 6vnt.1 | 6wdu.1 | 6wx3.1 | 6x0c.1 | 6xe3.1 | 6xin.1 | 6xnc.1 | 6xoy.1 | 6xrh.1 | 6xsy.1 | 6xt0.1 | 7jhw.1 | 7jll.1 | 7jmq.1 | 7jmq.2 | 7jqw.1 | 7jtt.1 | 7k0b.1 | 7k5a.1 | 7ka1.1 | 7kbn.1 | 7kh6.1 | 7ki7.1 | 7kmc.1 | 7kq9.1 | 7kqf.1 | 7ku9.1 | 7kwv.1 | 7kxc.1 | 7kyt.1 | 7l03.1 | 7l1h.1 | 7l47.1 | 7l4d.1 | 7l5h.1 | 7lev.1 | 7lgx.1 | 7lkl.1 | 7lpf.1 | 7lt4.1 | 7ltp.1 | 7lv5.1 | 7lvx.1 | 7lx1.1 | 7ly8.1 | 7m2l.1 | 7m3s.1 | 7m3s.2 | 7me8.1 | 7mt4.1 | 7mt5.1 | 7mt6.1 | 8b03.1 | 8b05.1 | 8b06.1 | 8b08.1 | 8eyp.1 | 8eys.1 | 8ezc.1