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SMTL ID : 7tr2.1

Apo CaKip3[2-436]-L2-mutant(HsKHC) in complex with a microtubule

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1:

21 residues within 4Å:

Chain B: G.10, Q.11, A.12, Q.15, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231
Chain C: L.246, K.252
Ligands: MG.2

20 PLIP interactions:

18 interactions with chain B, 2 interactions with chain C

Hydrogen bonds: B:Q.11, B:A.100, B:N.101, B:N.101, B:S.140, B:G.143, B:G.144, B:T.145, B:G.146, B:E.183, B:N.206, B:Y.224, B:N.228, B:N.228, B:N.228
pi-Stacking: B:Y.224, B:Y.224
pi-Cation interactions: B:Y.224
Salt bridges: C:K.252, C:K.252

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2:

2 residues within 4Å:

Chain B: E.71
Ligands: GTP.1

No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3:

15 residues within 4Å:

Chain C: G.10, Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, N.226

13 PLIP interactions:

13 interactions with chain C

Hydrogen bonds: C:Q.11, C:C.12, C:S.138, C:G.142, C:G.144, C:D.177, C:E.181, C:N.204, C:N.226, C:N.226, C:N.226
pi-Stacking: C:Y.222, C:Y.222

1 x TA1: TAXOL(Non-covalent)

TA1.4:

18 residues within 4Å:

Chain C: E.22, V.23, D.26, L.215, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360

12 PLIP interactions:

12 interactions with chain C

Hydrophobic interactions: C:E.22, C:V.23, C:V.23, C:D.26, C:H.227, C:L.228, C:A.231, C:F.270, C:P.358
Hydrogen bonds: C:T.274, C:Q.279, C:P.358

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hunter, B. et al., Kinesin-8-specific loop-2 controls the dual activities of the motor domain according to tubulin protofilament shape. Nat Commun (2022)

Release Date

2022-07-13

Peptides

Kinesin-like protein,Kinesin-1 heavy chain: A
Tubulin alpha-1B chain: B
Tubulin beta-2B chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
A

C
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Kinesin-like protein,Kinesin-1 heavy chain

Tubulin alpha-1B chain

Tubulin beta-2B chain

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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