SMTL ID : 7uwe.1

CryoEM Structure of E. coli Transcription-Coupled Ribonucleotide Excision Repair (TC-RER) complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain C: A.18 Chain G: D.460, D.462, D.464 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.460, G:D.462, G:D.462, G:D.464, G:D.464

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain G: C.70, L.71, C.72, G.73, K.74 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:C.70, G:C.72 ZN.3: 5 residues within 4Å: Chain G: C.814, R.883, C.888, C.895, C.898 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.814, G:C.888, G:C.895, G:C.898

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, Z. et al., RNA polymerase drives ribonucleotide excision DNA repair in E. coli. Cell (2023)

Release Date

2023-05-31

Peptides

DNA-directed RNA polymerase subunit alpha: DE
DNA-directed RNA polymerase subunit beta: F
DNA-directed RNA polymerase subunit beta': G
DNA-directed RNA polymerase subunit omega: H
Ribonuclease HII: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
G

E
H

F
I

G
J

H
K

I
C

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

Ribonuclease HII

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