SMTL ID : 7uwh.1

CryoEM Structure of E. coli Transcription-Coupled Ribonucleotide Excision Repair (TC-RER) complex bound to ribonucleotide substrate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain G: C.70, C.72, C.85, C.88 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.70, G:C.72, G:C.85, G:C.88 ZN.2: 4 residues within 4Å: Chain G: C.814, C.888, C.895, C.898 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.814, G:C.888, G:C.895, G:C.898

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain G: D.460, D.462, D.464 Chain I: A.18 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.460, G:D.462, G:D.464, G:D.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, Z. et al., RNA polymerase drives ribonucleotide excision DNA repair in E. coli. Cell (2023)

Release Date

2023-05-31

Peptides

Ribonuclease HII: C
DNA-directed RNA polymerase subunit alpha: DE
DNA-directed RNA polymerase subunit beta: F
DNA-directed RNA polymerase subunit beta': G
DNA-directed RNA polymerase subunit omega: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

D
G

E
H

F
I

G
J

H
K

Ribonuclease HII

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

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