SMTL ID : 7wgp.1

X-ray structure of human PPAR gamma ligand binding domain-fenofibric acid co-crystals obtained by co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

hetero-1-1-mer

Ligands

3 x F5A: 2-[4-(4-chlorobenzene-1-carbonyl)phenoxy]-2-methylpropanoic acid(Non-covalent)

F5A.1: 16 residues within 4Å: Chain A: A.80, I.83, F.84, C.87, Q.88, S.91, H.125, L.158, F.162, F.165, M.166, H.251, L.255, L.271, Y.275 Ligands: F5A.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.83, A:F.84, A:F.84, A:F.84, A:F.165, A:F.165, A:F.165, A:Y.275 Hydrogen bonds: A:S.91, A:S.91 Salt bridges: A:H.125, A:H.251 pi-Stacking: A:H.251 F5A.2: 14 residues within 4Å: Chain A: F.28, C.87, R.90, S.91, A.94, E.97, I.128, M.131, L.132, L.135, I.143, M.166 Ligands: F5A.1, F5A.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.90, A:R.90, A:A.94, A:I.128, A:M.131, A:L.132 Hydrogen bonds: A:R.90 Salt bridges: A:R.90 F5A.3: 17 residues within 4Å: Chain A: I.51, L.57, E.61, F.66, K.67, H.68, R.82, G.86, C.87, F.89, R.90, E.93, I.143, S.144, E.145, M.150 Ligands: F5A.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.57, A:F.66, A:R.90 Hydrogen bonds: A:K.67, A:H.68 Salt bridges: A:H.68 pi-Stacking: A:F.66 Halogen bonds: A:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Honda, A. et al., Functional and Structural Insights into Human PPAR alpha / delta / gamma Subtype Selectivity of Bezafibrate, Fenofibric Acid, and Pemafibrate. Int J Mol Sci (2022)

Release Date

2022-05-25

Peptides

Isoform 1 of Peroxisome proliferator-activated receptor gamma: A
15-meric peptide from Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isoform 1 of Peroxisome proliferator-activated receptor gamma

15-meric peptide from Nuclear receptor coactivator 1

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