SMTL ID : 7z2g.1

Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with doravirine

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x 2KW: 3-chloro-5-({1-[(4-methyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)methyl]-2-oxo-4-(trifluoromethyl)-1,2-dihydropyridin-3-yl}oxy)benzonitrile(Non-covalent)

2KW.1: 18 residues within 4Å: Chain A: P.97, L.102, K.103, K.105, V.108, V.110, V.181, Y.183, Y.190, V.191, G.192, F.229, L.230, W.231, L.236, H.237, P.238, Y.320 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.102, A:K.105, A:V.110, A:L.236 Hydrogen bonds: A:K.105, A:K.105 pi-Stacking: A:Y.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-07-20

Peptides

Reverse transcriptase/ribonuclease H: A
Reverse transcriptase/ribonuclease H: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

Reverse transcriptase/ribonuclease H

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