SMTL ID : 8sts.1 (1 other biounit)

Crystal Structure of HIV-1 Reverse Transcriptase (Y181C, V106A) varient in Complex with 5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)-4-fluorophenoxy)-7-fluoro-2-naphthonitrile (JLJ636), a non-nucleoside inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.02 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7N1: 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile(Non-covalent)

7N1.1: 18 residues within 4Å: Chain A: L.102, K.103, K.104, K.105, A.108, V.110, V.181, C.183, Y.190, V.191, G.192, F.229, L.230, W.231, L.236, H.237, P.238, Y.320 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.108, A:V.110, A:V.181, A:Y.190, A:F.229, A:F.229 Hydrogen bonds: A:K.105, A:P.238 pi-Stacking: A:Y.190, A:W.231, A:W.231

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.445, D.500, D.551 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.445, A:D.551

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hollander, K. et al., Exploring novel HIV-1 reverse transcriptase inhibitors with drug-resistant mutants: A double mutant surprise. Protein Sci. (2023)

Release Date

2023-11-29

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Reverse transcriptase/ribonuclease H

p51 RT

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