SMTL ID : 8u6s.1

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 8-(2-(3-morpholino-3-oxopropoxy)phenoxy)indolizine-2-carbonitrile (JLJ757), a non-nucleoside inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VPB: (4S)-8-{2-[3-(morpholin-4-yl)-3-oxopropoxy]phenoxy}indolizine-2-carbonitrile(Non-covalent)

VPB.1: 17 residues within 4Å: Chain A: L.102, K.103, K.104, K.105, V.108, V.110, V.181, Y.183, Y.190, V.191, G.192, F.229, W.231, L.236, H.237, P.238, Y.320 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.102, A:L.102, A:Y.183, A:Y.190, A:Y.320 Hydrogen bonds: A:K.105 pi-Stacking: A:Y.183, A:Y.190, A:W.231, A:W.231

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: K.355, Y.356, A.357, R.358, K.376 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.355, A:K.355, A:A.357, A:R.358 Salt bridges: A:K.355, A:K.376 PO4.3: 5 residues within 4Å: Chain A: R.279, R.358, M.359, R.360, G.361 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.359, A:R.360, A:G.361, A:G.361 Salt bridges: A:R.279

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain A: D.445, D.500, H.541 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.445, A:D.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prucha, G.R. et al., Covalent and noncovalent strategies for targeting Lys102 in HIV-1 reverse transcriptase. Eur.J.Med.Chem. (2023)

Release Date

2023-11-08

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

p51 RT

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