SMTL ID : 4pwd.2 (1 other biounit)

Crystal structure of HIV-1 reverse transcriptase in complex with bulge-RNA/DNA and Nevirapine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NVP: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE(Non-covalent)

NVP.1: 13 residues within 4Å: Chain A: L.102, K.103, K.105, V.108, V.181, Y.183, Y.190, F.229, W.231, L.236, H.237, P.238, Y.320 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.108, A:V.181, A:Y.183, A:Y.190, A:W.231, A:L.236, A:Y.320

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.445, G.446, D.551 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.445, A:D.551

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, K. et al., Structures of HIV-1 RT-RNA/DNA ternary complexes with dATP and nevirapine reveal conformational flexibility of RNA/DNA: insights into requirements for RNase H cleavage. Nucleic Acids Res. (2014)

Release Date

2014-06-18

Peptides

HIV-1 Reverse Transcriptase, P66 subunit: A
HIV-1 Reverse Transcriptase, P51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

HIV-1 Reverse Transcriptase, P66 subunit

HIV-1 Reverse Transcriptase, P51 subunit

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