SMTL ID : 8fyj.1

Structure of HIV-1 BG505 SOSIP-HT2 in complex with two CD4 molecules (class I)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-1-3-2-mer
Ligands
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Dam, K.A. et al., Intermediate conformations of CD4-bound HIV-1 Env heterotrimers. Nature (2023)
Release Date
2023-10-18
Peptides
Envelope glycoprotein gp160: AB
Envelope glycoprotein gp160: C
Envelope glycoprotein gp41: DEF
T-cell surface glycoprotein CD4: GH
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
Y
H
Z

Envelope glycoprotein gp160

Envelope glycoprotein gp160

Envelope glycoprotein gp41

Toggle Identical (DE)

T-cell surface glycoprotein CD4

Toggle Identical (GH)

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