- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-3-mer
- Ligands
- 24 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG.1: 4 residues within 4Å:- Chain A: Q.263, N.265, S.303, R.412
No protein-ligand interaction detected (PLIP)NAG-NAG.2: 4 residues within 4Å:- Chain A: N.232, P.261, N.416
- Ligands: NAG-NAG-BMA-MAN-MAN.7
No protein-ligand interaction detected (PLIP)NAG-NAG.3: 5 residues within 4Å:- Chain A: T.98, Q.100, S.120, F.121, N.122
No protein-ligand interaction detected (PLIP)NAG-NAG.5: 2 residues within 4Å:- Chain A: N.246, N.249
No protein-ligand interaction detected (PLIP)NAG-NAG.6: 5 residues within 4Å:- Chain A: N.355, S.357
- Ligands: NAG-NAG.10, NAG-NAG.10, NAG.32
No protein-ligand interaction detected (PLIP)NAG-NAG.8: 5 residues within 4Å:- Chain A: V.104, N.106, N.118, Y.135, D.290
No protein-ligand interaction detected (PLIP)NAG-NAG.9: 6 residues within 4Å:- Chain A: N.265, T.267, H.299, N.301, T.383, R.412
No protein-ligand interaction detected (PLIP)NAG-NAG.10: 5 residues within 4Å:- Chain A: N.332, T.341, S.357
- Ligands: NAG-NAG.6, NAG-NAG.6
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 4 residues within 4Å:- Chain C: Q.263, N.265, S.303, R.412
No protein-ligand interaction detected (PLIP)NAG-NAG.12: 4 residues within 4Å:- Chain C: N.232, P.261, N.416
- Ligands: NAG-NAG-BMA-MAN-MAN.17
No protein-ligand interaction detected (PLIP)NAG-NAG.13: 5 residues within 4Å:- Chain C: T.98, Q.100, S.120, F.121, N.122
No protein-ligand interaction detected (PLIP)NAG-NAG.15: 2 residues within 4Å:- Chain C: N.246, N.249
No protein-ligand interaction detected (PLIP)NAG-NAG.16: 5 residues within 4Å:- Chain C: N.355, S.357
- Ligands: NAG-NAG.20, NAG-NAG.20, NAG.37
No protein-ligand interaction detected (PLIP)NAG-NAG.18: 3 residues within 4Å:- Chain C: N.118, Y.135, D.290
No protein-ligand interaction detected (PLIP)NAG-NAG.19: 6 residues within 4Å:- Chain C: N.265, T.267, H.299, N.301, T.383, R.412
No protein-ligand interaction detected (PLIP)NAG-NAG.20: 4 residues within 4Å:- Chain C: N.332, T.341
- Ligands: NAG-NAG.16, NAG-NAG.16
No protein-ligand interaction detected (PLIP)NAG-NAG.21: 4 residues within 4Å:- Chain E: Q.263, N.265, S.303, R.412
No protein-ligand interaction detected (PLIP)NAG-NAG.22: 4 residues within 4Å:- Chain E: N.232, P.261, N.416
- Ligands: NAG-NAG-BMA-MAN-MAN.27
No protein-ligand interaction detected (PLIP)NAG-NAG.23: 5 residues within 4Å:- Chain E: T.98, Q.100, S.120, F.121, N.122
No protein-ligand interaction detected (PLIP)NAG-NAG.25: 3 residues within 4Å:- Chain E: N.246, T.248, N.249
No protein-ligand interaction detected (PLIP)NAG-NAG.26: 5 residues within 4Å:- Chain E: N.355, S.357
- Ligands: NAG-NAG.30, NAG-NAG.30, NAG.42
No protein-ligand interaction detected (PLIP)NAG-NAG.28: 5 residues within 4Å:- Chain E: V.104, N.106, N.118, Y.135, D.290
No protein-ligand interaction detected (PLIP)NAG-NAG.29: 6 residues within 4Å:- Chain E: N.265, T.267, H.299, N.301, T.383, R.412
No protein-ligand interaction detected (PLIP)NAG-NAG.30: 5 residues within 4Å:- Chain E: N.332, T.341, S.357
- Ligands: NAG-NAG.26, NAG-NAG.26
No protein-ligand interaction detected (PLIP)- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA.4: 4 residues within 4Å:- Chain A: E.57, N.58
- Chain B: S.17
- Chain G: W.105
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.14: 4 residues within 4Å:- Chain C: E.57, N.58
- Chain D: S.17
- Chain I: W.105
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.24: 4 residues within 4Å:- Chain E: E.57, N.58
- Chain F: S.17
- Chain K: W.105
No protein-ligand interaction detected (PLIP)- 3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN.7: 10 residues within 4Å:- Chain A: S.179, E.181, L.231, N.232, N.346, G.348, Q.408, V.414, S.415
- Ligands: NAG-NAG.2
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.414
- Hydrogen bonds: A:G.348, A:Q.408
NAG-NAG-BMA-MAN-MAN.17: 10 residues within 4Å:- Chain C: S.179, E.181, V.224, L.231, N.232, G.348, Q.408, V.414, S.415
- Ligands: NAG-NAG.12
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:V.414
- Hydrogen bonds: C:Q.408
NAG-NAG-BMA-MAN-MAN.27: 8 residues within 4Å:- Chain E: S.179, E.181, L.231, N.232, G.348, V.414, S.415
- Ligands: NAG-NAG.22
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:V.414
- Hydrogen bonds: E:G.348, E:Q.408
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG.31: 2 residues within 4Å:- Chain A: N.204, T.206
Ligand excluded by PLIPNAG.32: 3 residues within 4Å:- Chain A: N.361
- Ligands: NAG-NAG.6, NAG-NAG.6
Ligand excluded by PLIPNAG.33: 3 residues within 4Å:- Chain A: N.271, I.292, V.410
Ligand excluded by PLIPNAG.34: 3 residues within 4Å:- Chain A: R.162, N.167
- Chain C: R.278
Ligand excluded by PLIPNAG.35: 1 residues within 4Å:- Chain A: N.103
Ligand excluded by PLIPNAG.36: 2 residues within 4Å:- Chain C: N.204, T.206
Ligand excluded by PLIPNAG.37: 4 residues within 4Å:- Chain C: S.357, N.361
- Ligands: NAG-NAG.16, NAG-NAG.16
Ligand excluded by PLIPNAG.38: 3 residues within 4Å:- Chain C: N.271, I.292, V.410
Ligand excluded by PLIPNAG.39: 3 residues within 4Å:- Chain C: R.162, N.167
- Chain E: R.278
Ligand excluded by PLIPNAG.40: 2 residues within 4Å:- Chain C: N.103, R.113
Ligand excluded by PLIPNAG.41: 2 residues within 4Å:- Chain E: N.204, T.206
Ligand excluded by PLIPNAG.42: 4 residues within 4Å:- Chain E: G.358, N.361
- Ligands: NAG-NAG.26, NAG-NAG.26
Ligand excluded by PLIPNAG.43: 3 residues within 4Å:- Chain E: N.271, I.292, V.410
Ligand excluded by PLIPNAG.44: 3 residues within 4Å:- Chain A: R.278
- Chain E: R.162, N.167
Ligand excluded by PLIPNAG.45: 2 residues within 4Å:- Chain E: N.103, R.113
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, H., Broad and potent HIV-1 neutralization in fusion peptide-primed SHIV-boosted macaques. To Be Published
- Release Date
- 2024-08-28
- Peptides
- BG505 DS-SOSIP Surface protein gp120: ACE
BG505 DS-SOSIP Transmembrane protein gp41: BDF
DJ85-b.01 FAB HEAVY CHAIN: GIK
DJ85-b.01 FAB LIGHT CHAIN: HJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EB
BD
DF
FG
GI
IK
KH
HJ
JL
L
SMTL ID : 8tkc.1
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
BG505 DS-SOSIP Surface protein gp120
Toggle Identical (ACE)BG505 DS-SOSIP Transmembrane protein gp41
Toggle Identical (BDF)DJ85-b.01 FAB HEAVY CHAIN
Toggle Identical (GIK)DJ85-b.01 FAB LIGHT CHAIN
Toggle Identical (HJL)Related Entries With Identical Sequence
4tvp.1 | 4zmj.1 | 5aco.1 | 5c7k.1 | 5cez.2 | 5cjx.1 | 5fyl.1 | 5t3x.1 | 5t3z.1 | 5thr.1 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5v8l.1 | 5v8m.1 | 5viy.1 | 5vj6.1 | 5w6d.1 | 6cm3.1 | 6crq.1 | 6de7.1 | 6did.1 | 6mn7.1 | 6mtj.1 | 6mtn.1 | 6mu6.1 | 6mu7.1 | 6mu8.1 more...less...6nf2.1 | 6nm6.1 | 6nnf.1 | 6nnj.1 | 6opa.1 | 6osy.1 | 6ot1.1 | 6oz4.1 | 6ozc.1 | 6pw6.1 | 6u0l.1 | 6u0n.1 | 6udj.1 | 6vi0.1 | 6vn0.1 | 6w03.1 | 6x96.1 | 6x97.1 | 6x98.1 | 6x9r.1 | 6x9r.2 | 6x9r.3 | 6x9s.1 | 6x9s.2 | 6x9s.3 | 6x9t.1 | 6x9t.2 | 6x9t.3 | 6x9u.1 | 6x9u.2 | 6x9u.3 | 6x9v.1 | 6x9v.2 | 6x9v.3 | 6xrt.1 | 7kde.1 | 7lo6.1 | 7lok.1 | 7lpn.1 | 7mxe.1 | 7pc2.1 | 7rai.1 | 7tfn.1 | 7tfo.1 | 7txd.1 | 7ucf.1 | 7uoj.1 | 8dp1.1 | 8dto.1 | 8e1p.1 | 8euu.1 | 8euv.1 | 8euw.1 | 8fis.1 | 8fk5.1 | 8fl1.1 | 8flw.1 | 8fyj.1 | 8g85.1 | 8g9w.1 | 8g9x.1 | 8g9y.1 | 8gas.1 | 8jtd.1 | 8jtm.1 | 8sal.1 | 8san.1 | 8saq.1 | 8sat.1 | 8sav.1 | 8sw3.1 | 8sw4.1 | 8tjr.1 | 8tjs.1 | 8tl2.1 | 8tl3.1 | 8tl4.1 | 8tl5.1 | 8tng.1 | 8tnh.1 | 8tni.1 | 8tnu.1 | 8to7.1 | 8top.1 | 8tq1.1 | 8ttw.1