SMTL ID : 8h3a.1

Cryo-EM Structure of the KBTBD2-CRL3~N8(removed)-CSN complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-2-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.138, H.140, D.151 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.138, A:H.140, A:D.151, A:D.151 ZN.2: 4 residues within 4Å: Chain L: L.52, C.53, C.68, H.80 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:H.80 ZN.3: 5 residues within 4Å: Chain L: W.72, G.73, W.101, E.102, F.103 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:E.102 ZN.4: 3 residues within 4Å: Chain L: L.52, C.56, E.66 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:C.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y. et al., Dynamic molecular architecture and substrate recruitment of cullin3-RING E3 ligase CRL3 KBTBD2. Nat.Struct.Mol.Biol. (2024)

Release Date

2023-10-11

Peptides

COP9 signalosome complex subunit 5: A
COP9 signalosome complex subunit 1: B
COP9 signalosome complex subunit 2: C
COP9 signalosome complex subunit 3: D
COP9 signalosome complex subunit 4: E
COP9 signalosome complex subunit 6: F
COP9 signalosome complex subunit 7b: G
COP9 signalosome complex subunit 8: H
Kelch repeat and BTB domain-containing protein 2: IK
Cullin-3: J
E3 ubiquitin-protein ligase RBX1: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

C
B

D
C

E
D

F
F

G
G

H
H

I
I

K
M

J
L

L
R

COP9 signalosome complex subunit 5

COP9 signalosome complex subunit 1

COP9 signalosome complex subunit 2

COP9 signalosome complex subunit 3

COP9 signalosome complex subunit 4

COP9 signalosome complex subunit 6

COP9 signalosome complex subunit 7b

COP9 signalosome complex subunit 8

Kelch repeat and BTB domain-containing protein 2

Cullin-3

E3 ubiquitin-protein ligase RBX1

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