SMTL ID : 9j63.1

Cryo-EM structure of neddylated Cul2-Rbx1-EloBC-FEM1B homodimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain D: C.42, C.45, H.80, C.83 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.42, D:C.45, D:H.80, D:C.83 ZN.2: 4 residues within 4Å: Chain D: C.75, H.77, C.94, D.97 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.75, D:H.77, D:C.94 ZN.3: 4 residues within 4Å: Chain D: C.53, C.56, C.68, H.82 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.53, D:C.56, D:C.68, D:H.82 ZN.4: 3 residues within 4Å: Chain H: C.42, C.45, H.80 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:C.42, H:C.45, H:H.80 ZN.5: 5 residues within 4Å: Chain H: C.75, H.77, C.94, L.96, D.97 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:C.75, H:H.77, H:C.94 ZN.6: 3 residues within 4Å: Chain H: C.53, C.68, H.82 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:C.53, H:C.68, H:H.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, Z. et al., Neddylation induces an intermediate auto-inhibited CRL2FEM1B E3 ubiquitin ligase. To Be Published

Release Date

2025-09-03

Peptides

Cullin-2: AE
Elongin-C: BF
Elongin-B: CG
E3 ubiquitin-protein ligase RBX1: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
D

B
C

F
F

C
B

G
G

D
E

H
H

Cullin-2

Elongin-C

Elongin-B

E3 ubiquitin-protein ligase RBX1

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