- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.02 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 2 residues within 4Å:- Chain A: G.155, R.156
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.156
GOL.4: 1 residues within 4Å:- Chain A: W.167
No protein-ligand interaction detected (PLIP)GOL.5: 2 residues within 4Å:- Chain A: G.288, I.289
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.289
GOL.6: 3 residues within 4Å:- Chain A: Y.102, H.199
- Ligands: VK6.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.147
GOL.7: 4 residues within 4Å:- Chain A: P.43, R.51, E.54, L.55
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.54
GOL.8: 3 residues within 4Å:- Chain A: Q.148, T.149, N.151
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.148, A:Q.148, A:N.151
GOL.9: 3 residues within 4Å:- Chain A: L.150, N.151, F.162
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.150
GOL.19: 2 residues within 4Å:- Chain B: G.155, R.156
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.156
GOL.20: 1 residues within 4Å:- Chain B: W.167
No protein-ligand interaction detected (PLIP)GOL.21: 2 residues within 4Å:- Chain B: G.288, I.289
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.289
GOL.22: 3 residues within 4Å:- Chain B: Y.102, H.199
- Ligands: VK6.27
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.147
GOL.23: 4 residues within 4Å:- Chain B: P.43, R.51, E.54, L.55
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.54, B:E.54
GOL.24: 3 residues within 4Å:- Chain B: Q.148, T.149, N.151
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.148, B:Q.148, B:T.149, B:N.151
GOL.25: 3 residues within 4Å:- Chain B: L.150, N.151, F.162
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.150
- 2 x ZN: ZINC ION(Non-covalent)
ZN.10: 4 residues within 4Å:- Chain A: H.199, D.201, H.279
- Ligands: VK6.11
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.199, A:D.201, A:D.201, A:H.279
ZN.26: 4 residues within 4Å:- Chain B: H.199, D.201, H.279
- Ligands: VK6.27
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.199, B:D.201, B:D.201, B:H.279
- 2 x VK6: 2-[(2~{Z})-3-oxidanyl-2-[(3~{R})-1-(phenylsulfonyl)pyrrolidin-3-yl]carbonylimino-1,3-thiazol-4-yl]ethanoic acid(Non-covalent)
VK6.11: 18 residues within 4Å:- Chain A: Y.145, Q.147, T.183, S.184, L.186, L.188, T.196, H.199, D.201, E.202, Q.203, F.207, K.214, H.279, I.281, W.296
- Ligands: GOL.6, ZN.10
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:T.196, A:I.281, A:W.296
- Hydrogen bonds: A:Y.145, A:T.196, A:E.202, A:Q.203
- Salt bridges: A:D.201, A:K.214
- pi-Stacking: A:W.296
VK6.27: 18 residues within 4Å:- Chain B: Y.145, Q.147, T.183, S.184, L.186, L.188, T.196, H.199, D.201, E.202, Q.203, F.207, K.214, H.279, I.281, W.296
- Ligands: GOL.22, ZN.26
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:T.196, B:I.281, B:W.296
- Hydrogen bonds: B:T.196, B:T.196, B:E.202, B:Q.203
- Salt bridges: B:D.201, B:K.214
- pi-Stacking: B:W.296
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Corner, T.P. et al., Structure-guided optimisation of N -hydroxythiazole-derived inhibitors of factor inhibiting hypoxia-inducible factor-alpha. Chem Sci (2023)
- Release Date
- 2023-12-13
- Peptides
- Hypoxia-inducible factor 1-alpha inhibitor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.02 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x VK6: 2-[(2~{Z})-3-oxidanyl-2-[(3~{R})-1-(phenylsulfonyl)pyrrolidin-3-yl]carbonylimino-1,3-thiazol-4-yl]ethanoic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Corner, T.P. et al., Structure-guided optimisation of N -hydroxythiazole-derived inhibitors of factor inhibiting hypoxia-inducible factor-alpha. Chem Sci (2023)
- Release Date
- 2023-12-13
- Peptides
- Hypoxia-inducible factor 1-alpha inhibitor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A