SMTL ID : 8pbl.1

E. coli RNA polymerase elongation complex stalled at thymine dimer lesion

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain F: C.70, C.72, C.85, C.88 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.70, F:C.72, F:C.85, F:C.88 ZN.2: 5 residues within 4Å: Chain F: C.814, R.883, C.888, C.895, C.898 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.814, F:C.888, F:C.895, F:C.898

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woodgate, J. et al., Translation selectively destroys non-functional transcription complexes. Nature (2024)

Release Date

2023-10-25

Peptides

DNA-directed RNA polymerase subunit alpha: CD
DNA-directed RNA polymerase subunit beta: E
DNA-directed RNA polymerase subunit beta': F
DNA-directed RNA polymerase subunit omega: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
D

D
E

E
F

F
G

G
H

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

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