SMTL ID : 8pen.1

fully recruited RfaH bound to E. coli transcription complex paused at ops site (alternative state of RfaH)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.70, C.72, C.85, C.88 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.70, C:C.72, C:C.85, C:C.88 ZN.2: 5 residues within 4Å: Chain C: C.814, R.883, C.888, C.895, C.898 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.814, C:C.888, C:C.895, C:C.898

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain C: D.460, D.462, D.464 Chain I: G.16, U.17 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.460, C:D.460, C:D.462, C:D.462

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zuber, P.K. et al., Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun (2024)

Release Date

2024-04-24

Peptides

Transcription antitermination protein RfaH: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase subunit beta': C
DNA-directed RNA polymerase subunit omega: D
DNA-directed RNA polymerase subunit alpha: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
I

C
J

D
K

E
G

F
H

Transcription antitermination protein RfaH

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

DNA-directed RNA polymerase subunit alpha

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