SMTL ID : 8rj5.2 (1 other biounit)

P1-15 T-cell Receptor bound to HLA A*2402-NF9 pMHC complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.02 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ASN- TYR- ASN- TYR- LEU- TYR- ARG- LEU- PHE: Spike protein S1(Non-covalent)

ASN-TYR-ASN-TYR-LEU-TYR-ARG-LEU-PHE.1: 42 residues within 4Å: Chain A: M.6, Y.8, F.23, A.25, M.46, Y.60, E.64, K.67, V.68, H.71, T.74, E.77, N.78, I.81, Y.85, L.96, M.98, F.100, H.115, Y.117, Y.124, T.144, K.147, W.148, A.151, V.153, Q.156, Q.157, Y.160, T.164, G.168, R.171, Y.172 Chain C: A.30, Q.32, S.33, N.92, Y.99 Chain D: S.99, G.100, G.101, Y.102 43 PLIP interactions: 35 interactions with chain A, 6 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: A:H.71, A:E.77, A:N.78, A:I.81, A:L.96, A:F.100, A:F.100, A:T.144, A:W.148, A:V.153, A:Y.160, A:T.164, D:Y.102, C:Q.32, C:Y.99 Hydrogen bonds: A:Y.8, A:E.64, A:E.64, A:K.67, A:T.74, A:N.78, A:N.78, A:Y.85, A:Q.156, A:Q.156, A:Q.156, A:Q.157, A:Q.157, A:Y.160, A:R.171, A:R.171, A:Y.172, A:Y.172, D:Y.102, D:Y.102, D:Y.102 Salt bridges: A:K.147, D:E.103 pi-Stacking: A:Y.8, A:F.100, A:Y.117, A:Y.124 pi-Cation interactions: D:Y.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Motozono, C. et al., NF9 T-cell Receptor bound to HLA A*2402-NF9 pMHC complex (Paper Pending). To Be Published

Release Date

2025-01-01

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B
P1-15 T-cell Receptor Alpha Chain: C
P1-15 T-cell Receptor Beta Chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
I

D
J

MHC class I antigen

Beta-2-microglobulin

P1-15 T-cell Receptor Alpha Chain

P1-15 T-cell Receptor Beta Chain

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