SMTL ID : 8rq0.1

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-3-mer

Ligands

None

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH

Citation

Lauer, S.M. et al., Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88. Nat Commun (2024)

Release Date

2024-05-22

Peptides

Large ribosomal subunit protein bL32: A
Large ribosomal subunit protein bL33: B
Large ribosomal subunit protein bL34: C
Large ribosomal subunit protein bL35: D
Large ribosomal subunit protein bL36A: E
Large ribosomal subunit protein bL31: F
Large ribosomal subunit protein uL2: I
Large ribosomal subunit protein uL3: J
Large ribosomal subunit protein uL4: K
Large ribosomal subunit protein uL5: L
Large ribosomal subunit protein uL6: M
Large ribosomal subunit protein bL9: N
Large ribosomal subunit protein uL13: O
Large ribosomal subunit protein uL14: P
Large ribosomal subunit protein uL15: Q
Large ribosomal subunit protein uL16: R
Large ribosomal subunit protein bL17: S
Large ribosomal subunit protein uL18: T
Large ribosomal subunit protein bL19: U
Large ribosomal subunit protein bL20: V
Large ribosomal subunit protein bL21: W
Large ribosomal subunit protein uL22: X
Large ribosomal subunit protein uL23: Y
Large ribosomal subunit protein uL24: Z
Large ribosomal subunit protein bL25: 0
Large ribosomal subunit protein bL27: 1
Large ribosomal subunit protein bL28: 2
Large ribosomal subunit protein uL29: 3
Large ribosomal subunit protein uL30: 4
Apidaecins type 88: 567

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

F
6

I
C

J
D

K
E

L
F

M
G

N
H

O
J

P
K

Q
L

R
M

S
N

T
O

U
P

V
Q

W
R

X
S

Y
T

Z
U

0
V

1
W

2
X

3
Y

4
Z

5
x

6
y

7
z

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL33

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

Large ribosomal subunit protein bL36A

Large ribosomal subunit protein bL31

Large ribosomal subunit protein uL2

Large ribosomal subunit protein uL3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein bL9

Large ribosomal subunit protein uL13

Large ribosomal subunit protein uL14

Large ribosomal subunit protein uL15

Large ribosomal subunit protein uL16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

Large ribosomal subunit protein bL21

Large ribosomal subunit protein uL22

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

Large ribosomal subunit protein bL25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Apidaecins type 88

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